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Ernest Bonat, Ph.D.

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Ernest Bonat, Ph.D.

Machine Learning Applications in Genomics Life Sciences by Ernest Bonat, Ph.D.

Updated: Feb/24/2024

10 min readApr 17, 2023

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Machine Learning Applications in Genomics Life Sciences by Ernest Bonat, Ph.D.

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Ernest Bonat, Ph.D.

Apply Machine Learning Algorithms for Genomics Data Classification

Ernest Bonat, Ph.D., Bishes Rayamajhi, M.S.

33 min readFeb 3, 2021

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Apply Machine Learning Algorithms for Genomics Data Classification

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Ernest Bonat, Ph.D.

DNA Sequences Preprocessing Using PySpark Library

1. Overview 2. Splice-junction Gene Sequences Dataset 3. Custom PySpark DataFrame ‘shape’ Attribute 4. PySpark DataFrame Loading 5…

6 min readFeb 24, 2024

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DNA Sequences Preprocessing Using PySpark Library

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Ernest Bonat, Ph.D.

ELT Package Development with 3-Tier Architecture for Data Engineering

1. Overview 2. Why do you need ETL for Data Engineering? 3. A Simple ETL 3-Tier Architecture 4. ETL Package Development Example 5. Extract…

13 min readJan 23, 2024

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ELT Package Development with 3-Tier Architecture for Data Engineering

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Ernest Bonat, Ph.D.

Apply Machine Learning Algorithms to Classify Oregon Wildland Fire Triggers: Man-made or Nature…

Ernest Bonat, Ph.D., Dixie Downey

16 min readDec 23, 2023

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Apply Machine Learning Algorithms to Classify Oregon Wildland Fire Triggers: Man-made or Nature…

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Ernest Bonat, Ph.D.

Advanced DNA Sequence Text Classification Using Natural Language Processing

1. Overview 2. Generate DNA Sequence K-mers Substrings 3. DNA Sequence Text Preprocessing for Machine Learning Algorithms 4. DNA Sequence…

11 min readDec 21, 2023

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Advanced DNA Sequence Text Classification Using Natural Language Processing

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Ernest Bonat, Ph.D.

Fast DNA Sequence Data Loading — List vs. NumPy Array

Ernest Bonat, Ph.D.

6 min readAug 9, 2023

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Fast DNA Sequence Data Loading — List vs. NumPy Array

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Ernest Bonat, Ph.D.

DNA Sequence String Conversion to Label Encoder for Machine Learning Algorithms

1. Overview 2. Convert DNA Label Encoder Class Object 3. Convert DNA Sequence String CSV File to DNA Label Encoder CSV File 4. Convert DNA…

5 min readApr 18, 2023

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DNA Sequence String Conversion to Label Encoder for Machine Learning Algorithms

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Ernest Bonat, Ph.D.

Advanced DNA Sequences Preprocessing for Deep Learning Networks

Introduction DNA Sequence One-hot Encoder Review DNA Sequence One-Hot Encoder Padding DNA Sequence Dataset Cleaning Splice-junction Gene…

19 min readMar 29, 2023

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Advanced DNA Sequences Preprocessing for Deep Learning Networks

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Ernest Bonat, Ph.D.

One of the best solution of your question can be found in https://elferachid.medium.com/handling-var

1 min readJan 6, 2023

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Ernest Bonat, Ph.D.

Ernest Bonat, Ph.D.

I’m a Senior Data Scientist and Engineer consultant. I work on Machine Learning application projects for Life Sciences using Python and Python Data Ecosystem.

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