PinnedErnest Bonat, Ph.D.Machine Learning Applications in Genomics Life Sciences by Ernest Bonat, Ph.D.Updated: Apr/27/202411 min read·Apr 17, 2023----
PinnedErnest Bonat, Ph.D.Apply Machine Learning Algorithms for Genomics Data ClassificationErnest Bonat, Ph.D., Bishes Rayamajhi, M.S.33 min read·Feb 3, 2021--9--9
Ernest Bonat, Ph.D.Apply Machine Learning Algorithms for Classification Drug Discovery Data1. Overview 2. Research Question 3. Nonstructural Protein 5B Dataset Selection 4. PaDELPy Molecular Fingerprints Calculation 5. Applying…12 min read·2 days ago----
Ernest Bonat, Ph.D.DNA Sequences Preprocessing Using PySpark Library1. Overview 2. Splice-junction Gene Sequences Dataset 3. Custom PySpark DataFrame ‘shape’ Attribute 4. PySpark DataFrame Loading 5…6 min read·Feb 24, 2024----
Ernest Bonat, Ph.D.ELT Package Development with 3-Tier Architecture for Data Engineering1. Overview 2. Why do you need ETL for Data Engineering? 3. A Simple ETL 3-Tier Architecture 4. ETL Package Development Example 5. Extract…13 min read·Jan 23, 2024----
Ernest Bonat, Ph.D.Apply Machine Learning Algorithms to Classify Oregon Wildland Fire Triggers: Man-made or Nature…Ernest Bonat, Ph.D., Dixie Downey16 min read·Dec 23, 2023----
Ernest Bonat, Ph.D.Advanced DNA Sequence Text Classification Using Natural Language Processing1. Overview 2. Generate DNA Sequence K-mers Substrings 3. DNA Sequence Text Preprocessing for Machine Learning Algorithms 4. DNA Sequence…11 min read·Dec 21, 2023----
Ernest Bonat, Ph.D.Fast DNA Sequence Data Loading — List vs. NumPy ArrayErnest Bonat, Ph.D.6 min read·Aug 9, 2023----
Ernest Bonat, Ph.D.DNA Sequence String Conversion to Label Encoder for Machine Learning Algorithms1. Overview 2. Convert DNA Label Encoder Class Object 3. Convert DNA Sequence String CSV File to DNA Label Encoder CSV File 4. Convert DNA…5 min read·Apr 18, 2023----
Ernest Bonat, Ph.D.Advanced DNA Sequences Preprocessing for Deep Learning NetworksIntroduction DNA Sequence One-hot Encoder Review DNA Sequence One-Hot Encoder Padding DNA Sequence Dataset Cleaning Splice-junction Gene…19 min read·Mar 29, 2023--1--1